Having twin discs provides TWICE the stopping power of a single disc. This performance gain is offset, (in the big scheme of things), by the weight of the disc and calipers compromising the suspension.
In my humble opinion, the engineers at KTM, (and Moto GP and all the other genius engineers over the years working on bike design), have worked out that twin discs are a better compromise between the, (undoubtable need for weight and cost reduction), and the requirement to stop Colonel Klink smearing himself into the back of a dozy car driver when he needs to stop in a hurry. When appraising a lot of smaller, lighter bikes this equation works out in favour of one disc.
For your relatively heavy, very fast Superduke if you want to take your other disc and caliper and hoses off please do........ but go out and please take care of yourself. And ride slowly.